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The Genome Canada Competition II FPMI Project has concluded. These pages will be maintained for archival purposes. For information on the Competition III Pathogenomics of Innate Immunite (PI2) Project, please visit www.pathogenomics.ca

 

   

Events

 

 

 

 
Public Lectures
 
 
  • Brinkman, FSL. (Plenary Lecture) Computational Biology in the Post Genomics Era, Montreal, PQ, Canada. March 19-20, 2005.
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  • Brinkman, FSL. Current Topics in Genome Analysis series at the NHGRI, NIH, Bethesda, Maryland, USA. March 15, 2005.
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  • Hancock, R.E.W. Natural Peptides to Drugs, First International Congress, Mt. Zermatt, Switzerland. "Cationic host defence peptides as antibiotics and modulators of innate immunity", November 30-December 3, 2004.
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  • Hancock, R.E.W. Interscience Conference on Antimicrobial Agents and Chemotherapy, Washington DC. "Use of microarrays as a means of identifying new antibacterial targets", October 30- November 1, 2004.
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  • Hancock, R.E.W. North American Cystic Fibrosis Conference, St. Louis, Missouri. "Using the P. aeruginosa genome to understand pathogenesis," October 14-17, 2004.
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  • Hancock, R.E.W. Leaders Forum for Health Research, Ottawa. September 29-30, 2004.
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  • Hancock, R.E.W. Society for General Microbiology, 155th Ordinary Meeting. Trinity College, Dublin. "Host Defence Peptides", September 6-9, 2004.
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  • Finlay, B.B. Society for General Microbiology, 155th Ordinary Meeting. Trinity College, Dublin. Session Chair and Presenter: "Non-LEE encoded effectors of pathogenic E. coli", September 6-9, 2004.
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  • Bowdish, D. International Symposium SFB 617 - Molecular Mechanisms of Epithelial Defense. Kiel, Germany. "Cationic Antimicrobials in Host Defense". June 11 - 13, 2004.
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  • Hancock, REW. "What will pathogen genomics do for Healthcare?" Genomics Forum 2004, Genome BC. Vancouver. March 26, 2004.
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  • Scott. M. "The innate immune response to pathogen encounters", Canadian Gene Expression Conference, Vancouver. March 25, 2004.
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  • Brinkman, FSL. Canadian Cystic Fibrosis Foundation Annual General Meeting. March 23, 2004.
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  • Hancock, REW. "Moving from Fundamental Research to Industry". Building Biotech Symposium. Student Biotechnology Network. February 26, 2004.
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  • Babiuk, LA. International Symposium on Zoonoses. Japan February 12, 2004.
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  • Brinkman, FSL. BC Centre for Disease Control Seminar Series, December 12, 2003. Vancouver, BC, Canada.
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  • Babiuk, LA. Session Chair and Presenter. New Approaches in Molecular Biotechnology for Biomedicine. Austria, November 22-25, 2003.
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  • Hancock, REW. Commercialise 2003. Melbourne, Australia, Nov 18, 2003.
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  • Babiuk, LA. Session Chair and Presenter Viral Vaccines, Barcelona Spain Oct. 25-25, 2003.
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  • Brinkman, FSL. IMA/RECOMB Workshop on Comp. Genomics. Oct. 20-24, 2003.
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  • Finlay, Brett. ASM Conference on Salmonella: Pathogenesis, Epidemiology, and Vaccine Development, Alghero, Italy. Genomics Session Chair: "Genomics and the host cell response to Salmonella". Sept 21, 2003.
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  • Hancock, REW. Annual Meetingg of Austrian Society for Biochemistry and Molecular Biology, Graz, Austria, Sept. 21-25, 2003.
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  • Hancock, R.E.W. 2003 ICAAC. Aventis Award Lecture, Chicago September 15, 2003.
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  • Hancock, REW. 2003 International Pseudomonas Meeting, Keynote speaker, Quebec City. September 8, 2003.
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  • Babiuk, LA. NRC Genome Sciences August 20-23, 2003.
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  • Finlay, Brett. Gordon Research Conference on Molecular Mechanisms of Microbial Adhesion, Newport, Rhode Island, "Global analysis of pathogenic E. coli/Citrobacter virulence genes". July 28, 2003.
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  • Babiuk, LA. Keynote Address – 3rd International Veterinary Vaccines and Diagnostics Conference. Guelph Ont July 13-18, 2003.
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  • Hancock, REW. Bio 2003 Convention, Washington, DC, June 24-25, 2003.
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  • Babiuk, LA. and Hancock, REW. Bovine Genomics Workshop, Montreal, QC, June 17-19, 2003 (Lorne Babiuk, Conference Chair; Bob Hancock & Mitch Abrahamsen, speakers; Larry Schook, Sessional Chair).
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  • Finlay, Brett. 5th International Symposium on Shiga Toxin (Verocytotoxin), Edinburgh, Scotland, June 9, 2003 (Keynote speaker).
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  • Babiuk, LA. Molecular Vaccine and Delivery Systems. Dublin Ireland. June 4-6, 2003. 
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  • Hancock, REW. GRTM 21st Symposium, Montreal, QC May 26-28, 2003.
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  • Brinkman, FSL. 3rd Annual Conference of the Canadian Proteomics Initiative, May 23-25, 2003. Vancouver, BC, Canada.
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  • Hancock, REW. 4th Gordon Research Conference on Antimicrobial Peptides, Barga, Italy, April 27 – May 2, 2003.
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  • Allan, B. Campylobacter Symposium, NRC Ottawa Apr 28-29, 2003.
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  • Finlay, Brett. 2003 CBDN Annual General Meeting, “The hunt for type III secretion inhibitors”, Calgary, Alberta, April 25, 2003.
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  • Hancock, REW. Seminar, Dept of Microbiology, Trinity College, Dublin, April 25, 2003.
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  • Hancock, REW. Seminar, Dept of Oral Microbiology, University of Leeds, UK, April 24, 2003.
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  • Brinkman, FSL.   VanBUG Minisymposium: DNA Yesterday, Today and Tomorrow: A celebration of the discovery of the structure of DNA and the completion of the human genome sequence fifty years later. April 8, 2003. Vancouver, BC, Canada.
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  • Finlay, Brett.   The Second Governor's Conference on Ensuring Meat Safety: “E coli 0157:H7 - Progress and Challenges”, Lincoln, Nebraska, April 7, 2003.
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  • Hancock, REW.   Genome BC Genomics Forum, Vancouver, March 27, 2003.
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  • Scott, Monisha.   Canadian Gene Expression Conference, Vancouver, BC, February 23, 2003.
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  • Bacha, Jeffrey.  1st Annual BioPartnering North America, Vancouver, BC: Interview on ROB-TV regarding project activities and goals, Vancouver, BC, Feb. 10 – 11, 2003.
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  • Scott, Monisha.   Keystone Conference on “Innate Immunity”, Taos, New Mexico, January 31-February 4 2003.
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  • Hancock, REW.   3rd ASM and TIGR Conference on Microbial Genomes, New Orleans, LA, Jan 29-Feb 1, 2003.
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  • Hancock, REW.  Consumer Specialty Products Association (CSPA) Antimicrobial Div. Annual Meeting, Ft. Lauderdale, Dec.10, 2002.
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  • Hancock, REW.   Biofuture 2002, Vancouver, BC, Nov.21-22, 2002. Chair of Genomics session and speaker on AgBiotech.
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  • Hancock, REW.   AstraZeneca Symposium on Bacterial Permeability and Efflux, Boston, MA, Nov.8, 2002.
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    Abstracts and Poster Presentations
     

     

     

     
  • June 2005   13th International Conference on Intelligent Systems for Molecular Biology. Hsiao, W.W., P. Chilana, A. Fedynak and F.S.L. Brinkman (2005). IslandPath 2: web application aiding integrated analysis of genomic islands. 13th International Conference on Intelligent Systems for Molecular Biology. June 26 - 29, 2005, Detroit, Michigan, USA.
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  • April 2005   Canadian Society for Immunology 18th Annual Meeting. Yu, J., N. Mookherjee, K. Brown, R. Falsafi, S. Doria, F.M. Roche, K. Hokamp, F.S.L. Brinkman and R.E.W. Hancock (2005). Anti-endotoxin activity of the endogenous human host defence peptide LL-37. Canadian Society for Immunology 18th Annual Meeting. April 7-10, 2005, Whistler, BC, Canada.
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  • March 2005   World Congress on Microarray Technology. Hokamp, K., F.M. Roche and F.S.L. Brinkman (2005). Re-analysis of microarray data with improved methods and annotations. World Congress on Microarray Technology. March 19-20, 2005, Vancouver, B.C., Canada.
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  • March 2005   World Congress on Microarray Technology. Falsafi, R., K. Brown, N. Mookherjee, S. Doria, Y. Li, K. Hokamp, F.M. Roche, D. Bowdish, J-P. Powers, J. Pistolic, S-J. Lee, M. Chan, J. Bryan, F.S.L. Brinkman, S. Turvey, D. Speert, and R.E.W. Hancock (2005). Temporal Profile of Gene Expression in Monocytic Cells Exposed to Lipopolysaccharide. March 19-20, 2005, Vancouver, B.C., Canada.
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  • February 2005   Innate Immunity in Human Disease Symposium. Bowdish, D.M.E., G. Doho, F.M. Roche, K. Hokamp, Y.E. Lau, D.J Davidson, Y. Li, F.S.L. Brinkman, R.E.W. Hancock (2005). LL-37 is a host defence peptide which interacts directly with monocytes & epithelial cells and modulates the innate immune response. Innate Immunity in Human Disease Symposium. February 1, 2005, Vancouver, BC, Canada.
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  • February 2005  Canadian Bacterial Disease Network Annual General Meeting. Mookherjee, N., K. Brown, K. Hilpert, R. Falsafi, D. Bowdish, K. Hokamp, F.M. Roche, S. Doria, J. Pistolic, S.J. Lee, S. Fan, M. Chan, F.S.L. Brinkman and R.E.W. Hancock (2005). Role of human endogenous cathelicidin, LL-37, in modulation of inflammation. Canadian Bacterial Disease Network Annual General Meeting, February 13-16, 2005. Banff, AB, Canada.
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  • January 2005   Innate Immunity to Pathogens Keystone Symposium. Mookherjee, N., K. Brown, R. Falsafi, J. Bryan, K. Hokamp, F.M. Roche, S. Doria, D. Bowdish, J. Pistolic, M. Chan, S.J. Lee, F.S.L. Brinkman and R.E.W. Hancock (2005). Transcriptional profiling of human monocytic cell responses to host defence peptide LL-37: role of LL-37 in modulation of inflammation. Innate Immunity to Pathogens Keystone Symposium, January 8-13, 2005, Steamboat Springs, Colorado, USA.
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  • January 2005   Plant and Animal Genome XIII Conference 2005. Hodgson, P.D., P. Aich, A. Manuja, P.J. Griebel, K. Hokamp, F.S.L. Brinkman, A. Potter, L.A. Babiuk (2005). Effect of stress on viral-bacterial synergy in bovine respiratory disease. Plant and Animal Genome XIII Conference 2005, January 15-19, 2005, San Diego, CA, USA.
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  • January 2005   Innate Immunity to Pathogens Keystone Symposium. Dullaghan, E.W., M. Waldbrook, J. Ma, F.M. Roche, F.S.L. Brinkman, B.B. Finlay, R.E.W. Hancock, and M.G. Scott (2005). Synthetic Defense Peptides Protect Host Cells from Bacterial Pathogens by Induction of Protective Elements of the Innate Immune Response. Innate Immunity to Pathogens Keystone Symposium, January 8-13, 2005, Steamboat Springs, Colorado, USA.
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  • November 2004  The Endotoxin Society conference.   Bowdish DME, Davidson DJ, Lau YE, Hancock REW. The host defence peptide LL-37 is a multi-functional immunomodulator which interacts directly with the effector cells of the innate immune response. The Endotoxin Society conference. Nov 2004.
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  • October 2004   ASM Conference on Functional Genomics and Bioinformatics Approaches to Infectious Disease Research. G.H. Doho, F.M. Roche, R.E.W. Hancock, and F.S.L. Brinkman (2004). Computational analysis of transcription factor binding sites in human innate immunity genes. ASM Conference on Functional Genomics and Bioinformatics Approaches to Infectious Disease Research, October 6-9, 2004, Portland, Oregon, USA.
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  • October 2004  ASM Conference on Functional Genomics and Bioinformatics Approaches to Infectious Disease Research. W.W.L. Hsiao, K. Ung, D. Aeschliman, J. Bryan and F.S.L. Brinkman (2004). Prevalence of hypothetical proteins in prokaryotic genomic islands: Evidence of a large novel gene pool in horizontally acquired, versus vertically inherited, sequences. ASM Conference on Functional Genomics and Bioinformatics Approaches to Infectious Disease Research, October 6-9, 2004, Portland, Oregon, USA.
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  • July 2004  12th Annual Congress Immunology conference.   Bowdish DME, Davidson DJ, Lau YE, Hancock REW. The host defence peptide LL-37 is an immunomodulator which activates the mitogen-activated protein kinases ERK1/2 and p38 in monocytes and epithelial cells. 12th Annual Congress Immunology conference, Montreal July 2004
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  • July 2004   Intelligent Systems for Molecular Biology (ISMB 2004) Conference. F.M. Roche, K. Hokamp, M. Acab, L.A. Babiuk, R.E.W. Hancock, and F.S.L. Brinkman (2004). ProbeLynx: A tool for annotating microarray probe sequences. Intelligent Systems for Molecular Biology (ISMB 2004) Conference, July 31 - August 4, 2004, Glasgow, Scotland.
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  • July 2004   American Society of Virology.   Dar A, Munir S, Vishvanathan S, Manuja A, Griebel P, Tikoo S, Potter A, Kapur V, Babuik LA. Analysis of the host transcriptional physiology after avian infectious bronchitis virus infection in-ovo. American Society of Virology in Montreal July 2004
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  • July 2004   12th International Conference on Intelligent Systems for Molecular Biology.    Hokamp K, Roche FM, Acab M, Rousseau ME, Kuo B, Goode D, Aeschliman D, Bryan J, Babiuk LA, Hancock REW and Brinkman FSL. ArrayPipe: a powerful processing pipeline for Microarray Data with user-friendly automation and parallelization. Extended abstract prepared for ISMB. 2004
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  • July 2004   12th Annual Congress Immunology conference.   Lau YE, Rozek A, Scott MG, Goosney DL, Davidson DJ, Hancock REW. Interaction and cellular localization of the host defense peptide, LL-37, with lung epithelial cells. 12th Annual Congress Immunology conference, Montreal in July 2004
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  • June 2004   Canadian Society of Microbiologists.   Willson P, Mirakhur K, Sampathkumar B, Mace E, Reiman C, Gomis S, Babiuk LA, Potter A and Allan B. Development of a Campylobacter jejuni Colonization Model for Pathogenomics Studies in Poultry. Canadian Society of Microbiologists, Montreal Canada June 2004
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  • June 2004   Canadian Society of Microbiologists.   Sampathkumar B, Carrillo C, Willson P, Nash J, Potter A, Babiuk LA, and Allan B. Comparative proteomic and genomic analysis of Campylobacter jejuni NCTC 11168 grown on agar and in broth. Canadian Society of Microbiologists. Montreal Canada June 2004.
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  • May 2004  American Society for Microbiology AGM.   Hokamp K, Acab M, Doho G, Goode D, Hsiao W, Horsman B, Kuo B, Laird MR, Lo R, Roche FM, Rousseau M, Winsor G, Hancock REW and. Brinkman FSL. Bioinformatic approaches for the large scale study of multiple host-pathogen interactions involving humans and agriculturally relevant animals. American Society for Microbiology AGM, May 23-27 2004, New Orleans, Louisiana, USA.
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  • May 2004  American Society for Microbiology Annual General Meeting.   Hsiao, W, Ung K, and Brinkman FSL. IslandPath: Aiding detection of genomic islands in prokaryotes. American Society for Microbiology Annual General Meeting, May 23-27 2004, New Orleans, Louisiana, USA.
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  • April 2004  Intl Conf on Analysis of Microbial and Other Genomes.   Roche FM, Hokamp K, Acab M, Doho G, Goode D, Hsiao W, Horsman B, Kuo B, Laird MR, Lo R, Rousseau M, Winsor G, Hancock REW and. Brinkman FSL.. Bioinformatic approaches for the large scale study of multiple host-pathogen interactions involving humans and agriculturally relevant animals. Genomes 2004: Intl Conf on Analysis of Microbial and Other Genomes, Apr 14-17, 2004, Hinxton, UK.
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  • January 2004   Plant and Animal Genomics.   Pontarollo R, Horsman B, Wilson HL, Dar A, Potter A, Babiuk LA and Abrahamsen MS. Development of an oligo-based microarray for expression studies in poultry. Plant and Animal Genomics, San Diego, January 2004.
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  • September 2003    International Pseudomonas Conference.   Lewenza, S. et al. “Functional Genomics in Pseudomonas aeruginosa: Construction of a Mini-Tn5-lux Mutant Library and the Identification of Secreted and Membrane- Localized Proteins”. 2003 International Pseudomonas Conference, September 6-10, 2003. Quebec City, Quebec, Canada.
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  • August 2003   American Society for Microbiology Northwest Meeting.   Hsiao, W.K., K. Ung, and F.S.L. Brinkman. “IslandPath: Aiding detection of genomic islands in prokaryotes.” American Society for Microbiology Northwest Meeting, August 7-10, 2003. Vancouver, BC, Canada.
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  • August 2003   American Society for Microbiology Northwest Meeting.   Hokamp, K. et al. “Bioinformatic approaches for the large scale study of multiple host-pathogen interactions involving humans and agriculturally relevant animals.” American Society for Microbiology Northwest Meeting, August 7-10, 2003. Vancouver, BC, Canada.
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  • August 2003  American Society for Microbiology Northwest Meeting.  Hsiao, W.K., K. Ung, and F.S.L. Brinkman. “IslandPath: Aiding detection of genomic islands in prokaryotes.” American Society for Microbiology Northwest Meeting, August 7-10, 2003. Vancouver, BC, Canada.
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  • July 2003   American Society of Virology.   Dar A, Munir S, Kapur V, Goyal S, Patnayak D, Viswanathan S, Herzog K, Griebel P, Tikoo S, Potter A and Babiuk LA.: Host Gene Expression Profiles in Response to Avian Viral Respiratory Infection in-vivo and in-vitro. American Society of Virology, University of California, Davis. July 2003
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  • May 2003   Canadian Society of Microbiologists AGM.   Hsiao, W, Ung K, and Brinkman FSL. IslandPath: Aiding detection of genomic islands in prokaryotes. Canadian Society of Microbiologists AGM, May 25-28, 2003, Laval, Quebec
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  • April 2003   Society for General Microbiology 152nd Meeting.   Dullaghan E, Lowden M, Cheema M, Kuo B, Finlay BB, Scott M, and Hancock REW. Host Transcriptional Response to Bacteria and Bacterial Components. Society for General Microbiology 152nd Meeting, Edinburgh, Scotland. April 2003
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  • January 2003   Keystone Symp on Innate Immunity.   Rosenberger CM, Gallo RL, and Finlay BB. Macrophage signal transduction culminates in elastase-mediated impairment of intracellular Salmonella Typhimurium replication, Keystone Symp on Innate Immunity, Taos, New Mexico. January 2003
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  • January 2003   Keystone Symp on Innate Immunity.   Scott MG, Lee K, Bains M, Hu L, Lau EY, Wang A, Davidson BJ, Finlay BB, and Hancock REW. The human cationic peptide, LL-37, a modulator of the innate immune response, Keystone Symp on Innate Immunity, Taos, New Mexico. Jan 2003
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    Awards
     

     

     

       
  • Dr. Fiona Brinkman (SFU): Canadian Institutes of Health Research New Investigator (2005-2010)
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  • Dr. Fiona Brinkman (SFU): 2005 Canadian Who's Who
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  • Dr. Robert E. W. Hancock. Zellers Senior Scientist Award from the Canadian Cystic Fibrosis Foundation, 2004
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  • Dr. Robert E. W. Hancock. BC Innovation Council Award for Career Achievement, September 2004
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  • Dr. Robert E. W. Hancock. Canadian Cystic Fibrosis Foundation Zellers Scientist Award 2004
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  • Dr. Lorne Babiuk Anne and Neil McArthur Research Award, 2004
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  • Dr. Brett Finlay (UBC). Squibb Award of the Infectious Diseases Society of America.2004
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  • Dr. Brett Finlay (UBC). Michael Smith Prize in Health Research, Canadian Institutes for Health Research, 2004
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  • Dr. Brett Finlay (UBC). Squibb Award of the Infectious Diseases Society of America.2004
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  • Dr. Fiona S. L. Brinkman (SFU). Top 40 under 40 Award, Globe and Mail Report on Business, May 2004
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  • Dr. A. Potter. NSERC Industrial Research Chairs in Food Safety, 2004
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  • Dr. M. Scott. NRC Young Innovators Award, December 2004
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  • William Hsiao (SFU): 2004 CIHR Doctoral Research Award
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  • Dr. Lorne Babiuk received the Saskatchewan Order of Merit (News Release)
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  • Dr. Robert E. W. Hancock named Aventis Pharmaceuticals Awards Laureate (Press Release)
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  • Dr. Palok Aich (VIDO): “Award of Innovation”, Saskatoon, SK
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  • Dr. Lorne Babiuk (VIDO): Industry Leadership Award from the Canadian Animal Health Institute
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  • Dr. Fiona Brinkman (SFU) 2003 Canada's Top 40 Under 40 (awarded in 2004)
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  • Dr. Fiona Brinkman (SFU): 2003 Young Innovator Award, Science Council of BC
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  • Dr. Brett Finlay (UBC) BC Biotech 2003 Innovation and Achievement Award (Recognizes pioneering work towards the field of biotechnology.)
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  • Dr. Brett Finlay (UBC): National Merit Award, Ottawa Life Sciences Council, November 2003.
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  • Dr. Lorne Babiuk (VIDO) Canadian Animal Health Institute (CAHI) Industry Leadership Award
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  • Dawn Bowdish (UBC), CIHR Doctoral Research Award
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  • Dr. Phil Hardwidge (UBC), MSFHR Fellowship and NIH Postdoctoral Fellowship
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  • Brian Coombes (UBC), CIHR Fellowship and Michael Smith Foundation for Health Research Fellowship
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  • William Hsiao (SFU) Graduate student award from the Michael Smith Foundation for Health Research
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  • Dr. Karsten Hokamp (SFU) Post Doctoral Fellow Award from the Michael Smith Foundation for Health Research
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  • E. Y. Lau (UBC): Cystic Fibrosis: Graduate student award, 2003
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  • A. Rozek (Inimex): National Science and Engineering Research Council: Post Doctoral Fellow, 2003
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  • Dr. M Scott (Inimex): National Science and Engineering Research Council: Post Doctoral Fellow, 2003
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  • Dr. H. Wilson (VIDO): Health Services Utilization and Research Commission of Saskatchewan: Post Doctoral Fellow, 2003
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    Press Releases and News
     

     

     

     
  • Inimex Pharmaceuticals Press Releases
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  • VIDO News Releases
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  • UBC - Hancock Group
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  • UBC - Finlay Group
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  • SFU News (search Media &  PR for "Brinkman")
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    Other Events

     

     

       
     
  • Inimex Pharmaceuticals
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  • Microarray-related Conferences
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  • ASM Conference List
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  • Immunology Conferences
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  • TIGR Genomics Conferences list
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  • Bioinformatics-related Conferences
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      © 2002 Functional Pathogenomics of Mucosal Immunity . . . A Genome Prairie Project