| The Genome Canada Competition II FPMI Project has concluded. These pages will be maintained for archival purposes. For information on the Competition III Pathogenomics of Innate Immunite (PI2) Project, please visit www.pathogenomics.ca |
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| Protocols used within the
FPMI project. |
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| Resources - Software developed for this project. | ||
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| For the processing and analysis of microarry data a tool called
ArrayPipe was developed, which is available for standalone usage or as a webservice: http://www.pathogenomics.ca/arraypipe It provides functions for data visualization, background correction, normalization, detection of differentially expressed genes, comparison and highlighting of gene lists, as well as a web-based spreadsheet for data mining. Lead developer: Karsten Hokamp |
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| ProbeLynx is a tool for updating the association of microarray
probes to genes. Using the latest genomic sequence information and experimentally determined cross-hybridization cutoffs, ProbeLynx allows users to upload microarray probe sequences to re-examine probe specificity and provide annotation updates relevant to determining which gene(s) and transcript(s) are associated with a given probe. ProbeLynx is available as a web application at http://www.pathogenomics.ca/probelynx Lead developer: Fiona Roche |
© 2002 Functional Pathogenomics of Mucosal Immunity . . . A Genome Prairie Project