|
|
ehmmpfam |
% ehmmpfam 7LES_DROME ../ehmm-own-keep/myhmms
Align single sequence with an HMM
Output file [7les_drome.ehmmpfam]:
CS PSPPRNFSVRVLSPRELEVSWLPPEQLRSESVYYTLHWQQELDGENV
RF PSPPRNFSVRVLSPRELEVSWLPPEQLRSESVYYTLHWQQELDGENV
*->PsaPpnlsvtevtstsillsWwppdpggggyivyyvysegggdeeee
Ps+P+n sv ++ + +sW pp+ ++ ++y +++++++d e++
7LES_DROME 1799 PSPPRNFSVRVLSPRELEVSWLPPEQLRSESVYYTLHWQQELDGENV 1845
CS QDRREWEAHERRLETAGTHRLTGIKPGSGYSLWVQAH
RF QDRREWEAHERRLETAGTHRLTGIKPGSGYSLWVQAH
ttpstsnttttllllllltytvyvvvvvsasssggsg<-*
++++ + ++++l + ++ + + +++s + +
7LES_DROME 1846 QDRREWEAHERRLETAGTHRLTGIKPGSGYSLWVQAH 1882
CS LKLLRFLGSGAFGEVYEGQLKTEDSEEPQRVAIKSLRKGASEFAELL
RF LKLLRFLGSGAFGEVYEGQLKTEDSEEPQRVAIKSLRKGASEFAELL
*->yelgekLGeGafGkVykakhkdtgkavaiKvikkekekekeeeteer
++l++ LG+GafG+Vy++++k ++ + + v++k+ +k e +e +
7LES_DROME 2209 LKLLRFLGSGAFGEVYEGQLKTEDSEEPQRVAIKSLRKGASEFAELL 2255
CS QEAQLMSNFKHENIVRLVGICFDTESISLIMEHMEAGDLLSYLRAARATS
RF QEAQLMSNFKHENIVRLVGICFDTESISLIMEHMEAGDLLSYLRAARATS
elrllknllhlniiilsehieytldlllllmellellllllllklrlvls
++++l+++ ++++i++++ i ++++++ l+me +e ++ll++l++ +++s
7LES_DROME 2256 QEAQLMSNFKHENIVRLVGICFDTESISLIMEHMEAGDLLSYLRAARATS 2305
CS TQEPQPTAGLSLSELLAMCIDVANGCSYLEDMHFVHRDLACRNCLVTEST
RF TQEPQPTAGLSLSELLAMCIDVANGCSYLEDMHFVHRDLACRNCLVTEST
elviaatliallliylllhhhlhidrkdlldlllldnlllikdidladlv
++ t l + l +++ + + l+d+++++++l++ + +++ +
7LES_DROME 2306 TQEPQPTAGLSLSELLAMCIDVANGCSYLEDMHFVHRDLACRNCLVTEST 2355
CS GSTDRRRTVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMSPESLVDGLFT
RF GSTDRRRTVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMSPESLVDGLFT
llgsstltkkttstgtyrapevlageyssssslsssevlslevllilllg
+++++ +t k++++g r +++ +++ +++++l +++++s+e+l + l++
7LES_DROME 2356 GSTDRRRTVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMSPESLVDGLFT 2405
CS TQSDVWAFGVLCWEILTLGQQPYAARNNFEVLAHVKEGGRLQQPPMCTEK
RF TQSDVWAFGVLCWEILTLGQQPYAARNNFEVLAHVKEGGRLQQPPMCTEK
tplgslldekllliildlifdpprpspleelsedlskllplplklrkpll
t ++++++ l ++il+l+++p+ +++ e+ +++ ++l+++++++++
7LES_DROME 2406 TQSDVWAFGVLCWEILTLGQQPYAARNNFEVLAHVKEGGRLQQPPMCTEK 2455
CS LYSLLLLCWRTDPWERPSFRR
RF LYSLLLLCWRTDPWERPSFRR
lllplrlnplskllallsplk<-*
l l l ++++++ ++s+++
7LES_DROME 2456 LYSLLLLCWRTDPWERPSFRR 2476
|
Go to the input files for this example
Go to the output files for this example
Standard (Mandatory) qualifiers:
[-seqall] seqall Sequence database USA
[-hmmfile] infile HMM file
[-outfile] outfile Output file name
Additional (Optional) qualifiers: (none)
Advanced (Unprompted) qualifiers:
-nucleic boolean Force nucleic comparison
-nalign integer Number of alignments
-evalue float E-value cutoff
-hitcut float Hit score cutoff
-dbsize integer Calc E-value for DB size n
-cpu integer Number of CPUs
-dome float E-value domain cutoff
-domt float Hit score domain cutoff
-forward boolean Use forward algorithm
-nulltwo boolean Turn off second null model
-pvm boolean Use parallel virtual machine
-xnu boolean Use XNU filtering
Associated qualifiers:
"-seqall" associated qualifiers
-sbegin1 integer Start of each sequence to be used
-send1 integer End of each sequence to be used
-sreverse1 boolean Reverse (if DNA)
-sask1 boolean Ask for begin/end/reverse
-snucleotide1 boolean Sequence is nucleotide
-sprotein1 boolean Sequence is protein
-slower1 boolean Make lower case
-supper1 boolean Make upper case
-sformat1 string Input sequence format
-sdbname1 string Database name
-sid1 string Entryname
-ufo1 string UFO features
-fformat1 string Features format
-fopenfile1 string Features file name
"-outfile" associated qualifiers
-odirectory3 string Output directory
General qualifiers:
-auto boolean Turn off prompts
-stdout boolean Write standard output
-filter boolean Read standard input, write standard output
-options boolean Prompt for standard and additional values
-debug boolean Write debug output to program.dbg
-verbose boolean Report some/full command line options
-help boolean Report command line options. More
information on associated and general
qualifiers can be found with -help -verbose
-warning boolean Report warnings
-error boolean Report errors
-fatal boolean Report fatal errors
-die boolean Report deaths
|
| Standard (Mandatory) qualifiers | Allowed values | Default | |
|---|---|---|---|
| [-seqall] (Parameter 1) |
Sequence database USA | Readable sequence(s) | Required |
| [-hmmfile] (Parameter 2) |
HMM file | Input file | Required |
| [-outfile] (Parameter 3) |
Output file name | Output file | <sequence>.ehmmpfam |
| Additional (Optional) qualifiers | Allowed values | Default | |
| (none) | |||
| Advanced (Unprompted) qualifiers | Allowed values | Default | |
| -nucleic | Force nucleic comparison | Boolean value Yes/No | No |
| -nalign | Number of alignments | Any integer value | 100 |
| -evalue | E-value cutoff | Any numeric value | 10. |
| -hitcut | Hit score cutoff | Any numeric value | -1000000. |
| -dbsize | Calc E-value for DB size n | Any integer value | 59021 |
| -cpu | Number of CPUs | Any integer value | 0 |
| -dome | E-value domain cutoff | Any numeric value | 1000000. |
| -domt | Hit score domain cutoff | Any numeric value | -1000000. |
| -forward | Use forward algorithm | Boolean value Yes/No | No |
| -nulltwo | Turn off second null model | Boolean value Yes/No | No |
| -pvm | Use parallel virtual machine | Boolean value Yes/No | No |
| -xnu | Use XNU filtering | Boolean value Yes/No | No |
ID 7LES_DROME STANDARD; PRT; 2554 AA.
AC P13368;
DT 01-JAN-1990 (REL. 13, CREATED)
DT 01-JAN-1990 (REL. 13, LAST SEQUENCE UPDATE)
DT 01-NOV-1995 (REL. 32, LAST ANNOTATION UPDATE)
DE SEVENLESS PROTEIN (EC 2.7.1.112).
GN SEV.
OS DROSOPHILA MELANOGASTER (FRUIT FLY).
OC EUKARYOTA; METAZOA; ARTHROPODA; INSECTA; DIPTERA.
RN [1]
RP SEQUENCE FROM N.A.
RC STRAIN=CANTON-S;
RX MEDLINE; 88282538.
RA BASLER K., HAFEN E.;
RL CELL 54:299-311(1988).
RN [2]
RP SEQUENCE FROM N.A.
RC STRAIN=OREGON-R;
RX MEDLINE; 88329706.
RA BOWTELL D.L.L., SIMON M.A., RUBIN G.M.;
RL GENES DEV. 2:620-634(1988).
RN [3]
RP IDENTIFICATION OF FN-III REPEATS.
RX MEDLINE; 90199889.
RA NORTON P.A., HYNES R.O., RESS D.J.G.;
RL CELL 61:15-16(1990).
CC -!- FUNCTION: RECEPTOR FOR AN EXTRACELLULAR SIGNAL REQUIRED TO
CC INSTRUCT A CELL TO DIFFERENTIATE INTO A R7 PHOTORECEPTOR. THE
CC LIGAND FOR SEV IS THE BOSS (BRIDE OF SEVENLESS) PROTEIN ON THE
CC SURFACE OF THE NEIGHBORING R8 CELL.
CC -!- CATALYTIC ACTIVITY: ATP + A PROTEIN TYROSINE = ADP +
CC PROTEIN TYROSINE PHOSPHATE.
CC -!- SUBUNIT: MAY FORM A COMPLEX WITH DRK AND SOS.
CC -!- SIMILARITY: BELONGS TO THE INSULIN RECEPTOR FAMILY OF TYROSINE-
CC PROTEIN KINASES.
CC -!- SIMILARITY: CONTAINS SEVEN FIBRONECTIN TYPE III-LIKE DOMAINS.
CC -!- CAUTION: UNCLEAR WHETHER THE POTENTIAL MEMBRANE SPANNING REGION
CC NEAR THE N-TERMINUS IS PRESENT AS A TRANSMEMBRANE DOMAIN IN THE
CC NATIVE PROTEIN OR SERVES AS A CLEAVED SIGNAL SEQUENCE.
DR EMBL; X13666; G8579; ALT_INIT.
DR EMBL; J03158; G158419; -.
DR PIR; A28912; TVFF7L.
DR FLYBASE; FBGN0003366; SEV.
DR PROSITE; PS00107; PROTEIN_KINASE_ATP.
DR PROSITE; PS00109; PROTEIN_KINASE_TYR.
DR PROSITE; PS00239; RECEPTOR_TYR_KIN_II.
DR PROSITE; PS50011; PROTEIN_KINASE_DOM.
KW TRANSFERASE; TYROSINE-PROTEIN KINASE; TRANSMEMBRANE; ATP-BINDING;
KW PHOSPHORYLATION; RECEPTOR; VISION; REPEAT.
FT DOMAIN 1 2123 EXTRACELLULAR (POTENTIAL).
[Part of this file has been deleted for brevity]
FT VARIANT 1703 1703 N -> H.
FT VARIANT 1730 1730 R -> K.
FT VARIANT 1731 1731 G -> E.
FT VARIANT 1741 1741 V -> M.
FT VARIANT 2271 2271 R -> C.
FT CONFLICT 1823 1823 E -> Q (IN REF. 2).
SQ SEQUENCE 2554 AA; 287107 MW; 1143D891 CRC32;
MTMFWQQNVD HQSDEQDKQA KGAAPTKRLN ISFNVKIAVN VNTKMTTTHI NQQAPGTSSS
SSNSQNASPS KIVVRQQSSS FDLRQQLARL GRQLASGQDG HGGISTILII NLLLLILLSI
CCDVCRSHNY TVHQSPEPVS KDQMRLLRPK LDSDVVEKVA IWHKHAAAAP PSIVEGIAIS
SRPQSTMAHH PDDRDRDRDP SEEQHGVDER MVLERVTRDC VQRCIVEEDL FLDEFGIQCE
KADNGEKCYK TRCTKGCAQW YRALKELESC QEACLSLQFY PYDMPCIGAC EMAQRDYWHL
QRLAISHLVE RTQPQLERAP RADGQSTPLT IRWAMHFPEH YLASRPFNIQ YQFVDHHGEE
LDLEQEDQDA SGETGSSAWF NLADYDCDEY YMCEILEALI PYTQYRFRFE LPFGENRDEV
LYSPATPAYQ TPPEGAPISA PVIEHLMGLD DSHLAVHWHP GRFTNGPIEG YRLRLSSSEG
NATSEQLVPA GRGSYIFSQL QAGTNYTLAL SMINKQGEGP VAKGFVQTHS ARNEKPAKDL
TESVLLVGRR AVMWQSLEPA GENSMIYQSQ EELADIAWSK REQQLWLLNV HGELRSLKFE
SGQMVSPAQQ LKLDLGNISS GRWVPRRLSF DWLHHRLYFA MESPERNQSS FQIISTDLLG
ESAQKVGESF DLPVEQLEVD ALNGWIFWRN EESLWRQDLH GRMIHRLLRI RQPGWFLVQP
QHFIIHLMLP QEGKFLEISY DGGFKHPLPL PPPSNGAGNG PASSHWQSFA LLGRSLLLPD
SGQLILVEQQ GQAASPSASW PLKNLPDCWA VILLVPESQP LTSAGGKPHS LKALLGAQAA
KISWKEPERN PYQSADAARS WSYELEVLDV ASQSAFSIRN IRGPIFGLQR LQPDNLYQLR
VRAINVDGEP GEWTEPLAAR TWPLGPHRLR WASRQGSVIH TNELGEGLEV QQEQLERLPG
PMTMVNESVG YYVTGDGLLH CINLVHSQWG CPISEPLQHV GSVTYDWRGG RVYWTDLARN
CVVRMDPWSG SRELLPVFEA NFLALDPRQG HLYYATSSQL SRHGSTPDEA VTYYRVNGLE
GSIASFVLDT QQDQLFWLVK GSGALRLYRA PLTAGGDSLQ MIQQIKGVFQ AVPDSLQLLR
PLGALLWLER SGRRARLVRL AAPLDVMELP TPDQASPASA LQLLDPQPLP PRDEGVIPMT
VLPDSVRLDD GHWDDFHVRW QPSTSGGNHS VSYRLLLEFG QRLQTLDLST PFARLTQLPQ
AQLQLKISIT PRTAWRSGDT TRVQLTTPPV APSQPRRLRV FVERLATALQ EANVSAVLRW
DAPEQGQEAP MQALEYHISC WVGSELHEEL RLNQSALEAR VEHLQPDQTY HFQVEARVAA
TGAAAGAASH ALHVAPEVQA VPRVLYANAE FIGELDLDTR NRRRLVHTAS PVEHLVGIEG
EQRLLWVNEH VELLTHVPGS APAKLARMRA EVLALAVDWI QRIVYWAELD ATAPQAAIIY
RLDLCNFEGK ILQGERVWST PRGRLLKDLV ALPQAQSLIW LEYEQGSPRN GSLRGRNLTD
GSELEWATVQ PLIRLHAGSL EPGSETLNLV DNQGKLCVYD VARQLCTASA LRAQLNLLGE
DSIAGQLAQD SGYLYAVKNW SIRAYGRRRQ QLEYTVELEP EEVRLLQAHN YQAYPPKNCL
LLPSSGGSLL KATDCEEQRC LLNLPMITAS EDCPLPIPGV RYQLNLTLAR GPGSEEHDHG
VEPLGQWLLG AGESLNLTDL LPFTRYRVSG ILSSFYQKKL ALPTLVLAPL ELLTASATPS
PPRNFSVRVL SPRELEVSWL PPEQLRSESV YYTLHWQQEL DGENVQDRRE WEAHERRLET
AGTHRLTGIK PGSGYSLWVQ AHATPTKSNS SERLHVRSFA ELPELQLLEL GPYSLSLTWA
GTPDPLGSLQ LECRSSAEQL RRNVAGNHTK MVVEPLQPRT RYQCRLLLGY AATPGAPLYH
GTAEVYETLG DAPSQPGKPQ LEHIAEEVFR VTWTAARGNG APIALYNLEA LQARSDIRRR
RRRRRRNSGG SLEQLPWAEE PVVVEDQWLD FCNTTELSCI VKSLHSSRLL LFRVRARSLE
HGWGPYSEES ERVAEPFVSP EKRGSLVLAI IAPAAIVSSC VLALVLVRKV QKRRLRAKKL
LQQSRPSIWS NLSTLQTQQQ LMAVRNRAFS TTLSDADIAL LPQINWSQLK LLRFLGSGAF
GEVYEGQLKT EDSEEPQRVA IKSLRKGASE FAELLQEAQL MSNFKHENIV RLVGICFDTE
SISLIMEHME AGDLLSYLRA ARATSTQEPQ PTAGLSLSEL LAMCIDVANG CSYLEDMHFV
HRDLACRNCL VTESTGSTDR RRTVKIGDFG LARDIYKSDY YRKEGEGLLP VRWMSPESLV
DGLFTTQSDV WAFGVLCWEI LTLGQQPYAA RNNFEVLAHV KEGGRLQQPP MCTEKLYSLL
LLCWRTDPWE RPSFRRCYNT LHAISTDLRR TQMASATADT VVSCSRPEFK VRFDGQPLEE
HREHNERPED ENLTLREVPL KDKQLYANEG VSRL
//
|
HMMER2.0
NAME 7LES_DROME/1799-1891
ACC
DESC
LENG 84
ALPH Amino
RF yes
CS yes
MAP yes
COM ehmmbuild ../../data/hmm/fn3.slx fn3.hmm
COM ehmmcalibrate myhmms -seed 1079460101
NSEQ 109
DATE Fri Jul 15 12:00:00 2005
CKSUM 4633
XT -8455 -4 0 * -8455 -4 0 *
NULT -4 -8455
NULE 595 -1558 85 338 -294 453 -1158 197 249 902 -1085 -142 -21 -313 45 531 201 384 -1998 -644
EVD -7.797886 0.598186
HMM A C D E F G H I K L M N P Q R S T V W Y
m->m m->i m->d i->m i->i d->m d->d b->m m->e
-13 * -6794
1 -1696 -4266 -5468 -857 -4249 -2813 -1464 -707 -2361 323 -3458 -4826 3646 -1897 -4829 -1261 -1335 -180 -4697 -1445 1
P -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
P -9 -11957 -12999 -894 -1115 -701 -1378 -1013 -7375
2 -661 -5430 1594 -484 -5749 356 -3594 -5499 -1902 -454 -4519 -541 1746 -1534 -3682 1881 -218 -1175 -5614 -1565 2
S -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
S -9 -11957 -12999 -894 -1115 -701 -1378 -7388 -7366
3 1863 -5433 -1246 26 -5754 -787 -3592 -5505 174 -2261 -4522 -578 2069 517 -53 117 -885 -568 -5616 -1862 3
P -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
P -9 -11957 -12999 -894 -1115 -701 -1378 -7388 -7358
4 -933 -4330 -2306 -2375 -4321 -5548 -4342 -197 -4555 -1694 -3520 -1961 3679 -1767 -2193 -4571 -2165 1336 -4755 -4362 4
P -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
P -9 -11957 -12999 -894 -1115 -701 -1378 -7388 -7349
5 -1820 -5403 -2308 327 -457 168 -395 -1516 -104 -520 -384 -3583 1306 1270 1192 730 882 -1087 -5594 -1860 5
R -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
R -9 -11957 -12999 -894 -1115 -701 -1378 -7388 -7340
6 -982 -749 1190 -1011 -1118 1264 -288 -624 -762 -1316 -4520 2373 -1293 508 144 -1253 226 -5052 -320 -1913 6
N -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
N -9 -11957 -12999 -894 -1115 -701 -1378 -7388 -7331
7 -970 -4169 -164 -707 -29 -1178 -4516 340 -5043 1932 627 101 392 -968 -2232 -4736 -2233 1416 -4614 -4253 7
F -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
F -10 -11957 -12999 -894 -1115 -701 -1378 -7388 -7322
8 -1777 -5430 -1395 -133 -485 -1202 1638 -150 523 -314 -4519 -1070 -385 709 1029 806 906 500 -5614 -4932 8
S -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
S -10 -11957 -12999 -894 -1115 -701 -1378 -7388 -7313
9 1184 673 -6214 -5601 1588 -1269 -129 561 -975 -1205 -1064 -2147 -1311 219 -852 -479 57 1890 -4575 -4223 9
V -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
V -10 -11957 -12999 -894 -1115 -701 -1378 -7388 -7304
10 -618 -1044 -126 168 -1034 -1670 -1237 -302 -47 -169 624 -828 -5103 -865 -727 1021 1874 314 666 -1660 10
R -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
[Part of this file has been deleted for brevity]
V -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
V -17 -11290 -12332 -894 -1115 -701 -1378 -7171 -6443
57 415 -235 151 -1692 196 -943 -3424 1368 -281 543 1497 -1265 -4765 1123 -714 -1118 -698 331 -4311 -27 57
L -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
L -18 -11291 -12333 -894 -1115 -701 -1378 -7171 -6426
58 -392 -4801 1422 154 257 -976 -325 -348 1136 -182 -518 -449 -582 84 1071 -42 -259 -4422 -4984 -1114 58
D -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
D -18 -11291 -12333 -894 -1115 -701 -1378 -7171 -6409
59 1019 -244 -720 268 -486 -304 -511 -857 -597 384 -3883 1880 -1432 25 -266 -599 544 -1258 -4979 -4298 59
Q -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
Q -18 -11291 -12333 -894 -1115 -701 -1378 -7171 -6392
60 -648 -361 -1645 149 -1712 -98 -2976 195 284 942 2156 1642 -1798 637 -685 -614 -1393 -4368 -4953 -253 60
K -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
K -18 -11291 -12333 -894 -1115 -701 -1378 -7171 -6375
61 -495 -127 596 257 1 687 -344 -4870 388 -1674 888 2158 -252 554 -557 -1192 -645 -925 -4984 -1289 61
E -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
E -18 -11291 -12333 -894 -1115 -701 -1378 -7171 -6358
62 -1174 -4786 -513 345 -470 1975 1744 -1919 674 -976 236 503 -2145 935 -1306 -3214 -1546 -956 -4974 781 62
H -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
H -19 -11292 -12334 -894 -1115 -701 -1378 -7171 -6340
63 -666 -120 197 263 443 569 -3004 492 662 -346 -777 690 -4431 450 -205 -417 -479 105 -4895 226 63
R -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
R -19 -11292 -12334 -894 -1115 -701 -1378 -7171 -6322
64 -1695 -4564 90 808 321 -207 -958 170 606 -195 1319 -1668 -4468 42 233 -1958 -348 952 -101 1161 64
L -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
L -19 -11248 -12290 -894 -1115 -701 -1378 -7171 -6304
65 -103 -4195 176 -803 -407 598 -3169 618 -250 684 -592 616 -392 -2836 -1348 -575 500 786 -4517 -956 65
D -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
D -19 -11169 -12211 -894 -1115 -701 -1378 -7171 -6285
66 -3216 -41 863 117 14 1749 -370 -4753 -18 -877 1184 927 -1393 -238 899 -1126 -134 -1669 -4869 -1116 66
G -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
G -20 -11119 -12161 -894 -1115 -701 -1378 -7171 -6267
67 -883 -66 -1410 -539 -4946 1730 1102 -1518 1448 -2272 -346 1076 -4239 -706 -71 146 -220 -811 543 -284 67
R -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
R -20 -11076 -12119 -894 -1115 -701 -1378 -7171 -6248
68 -3135 -4561 -1467 -537 -307 -479 -2777 700 1697 -450 -3655 168 -4209 -801 2141 -780 -67 349 -4756 -4085 68
V -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
V -20 -11004 -12046 -894 -1115 -701 -1378 -7171 -6229
69 -554 1467 -1099 262 -1323 -4214 -2905 -212 965 313 -172 -1196 916 -979 443 -902 161 1207 401 -3800 69
I -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
I -20 -10946 -11988 -894 -1115 -701 -1378 -7171 -6209
70 -286 -3937 -130 157 -851 -1526 -2879 1413 133 1121 -3083 -2959 -59 -13 194 -3121 -1149 916 -4255 122 70
D -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
D -21 -10829 -11871 -894 -1115 -701 -1378 -7171 -6190
71 -1515 -4363 -145 -970 -4677 -1647 -167 764 1490 -1304 418 -973 10 -592 1727 -649 -596 1115 -4551 -717 71
P -149 -500 233 43 -381 399 106 -626 210 -466 -720 275 394 45 96 359 117 -369 -294 -249
P -21 -10478 -11520 -894 -1115 -701 -1378 -7171 -6170
72 -1247 1262 534 -2707 -3242 -1113 -2669 654 698 -335 -2371 -2868 -791 -448 781 -2905 -104 2274 -3578 -3123 72
K * * * * * * * * * * * * * * * * * * * *
K * * * * * * * -7171 0
//
|
Query: 7LES_DROME SEVENLESS PROTEIN (EC 2.7.1.112). Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- 7LES_DROME/2209-2481 115.9 7.6e-31 1 7LES_DROME/1799-1891 32.1 2.5e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- 7LES_DROME/1799-1891 1/1 1799 1882 .. 1 84 [] 32.1 2.5e-06 7LES_DROME/2209-2481 1/1 2209 2476 .. 1 268 [] 115.9 7.6e-31 Alignments of top-scoring domains: 7LES_DROME/1799-1891: domain 1 of 1, from 1799 to 1882: score 32.1, E = 2.5e-06 7LES_DROME/2209-2481: domain 1 of 1, from 2209 to 2476: score 115.9, E = 7.6e-31 // |
| Program name | Description |
|---|---|
| ealistat | Statistics for multiple alignment files |
| ehmmalign | Align sequences with an HMM |
| ehmmbuild | Build HMM |
| ehmmcalibrate | Calibrate a hidden Markov model |
| ehmmconvert | Convert between HMM formats |
| ehmmemit | Extract HMM sequences |
| ehmmfetch | Extract HMM from a database |
| ehmmindex | Index an HMM database |
| ehmmsearch | Search sequence database with an HMM |
Although we take every care to ensure that the results of the EMBOSS version are identical to those from the original package, we recommend that you check your inputs give the same results in both versions before publication.
Please report all bugs in the EMBOSS version to the EMBOSS bug team, not to the original author.