Overview Team Publications Presentations Resources Contact Links GenomeBC

ArrayPipe

Information

A Linux version of ArrayPipe is available for download under the Perl Artistic License. For a description of this tool, please refer to the ArrayPipe main page.

Downloads

(see the CHANGES file for information on changes)
version link size release
current (v1.7) arraypipe_1.7.tgz 328 KB Mon Aug 1 01:33:19 PST 2005
v1.6.1 arraypipe_1.6.1.tgz 301 KB Fri Mar 4 15:13:29 PST 2005
v1.6 arraypipe_1.6.tgz 300 KB Tue Feb 22 21:00:20 PST 2005
v1.5 arraypipe_1.5.tgz 294 KB Wed Jan 26 16:52:08 PST 2005
v1.4 arraypipe_1.4.tgz 256 KB Wed Oct 13 14:40:32 PDT 2004
v1.2 arraypipe_1.2.tgz 224 KB Thu Sep 9 23:08:22 PDT 2004
v1.0 arraypipe_1.0.tgz 215 KB Wed Jul 7 13:06:52 PDT 2004
v0.96 arraypipe_0.96.tgz 193 KB Wed May 26 16:14:45 PDT 2004
v0.9 arraypipe_0.9.tgz 180 KB Wed Apr 19 01:17:33 PDT 2004

Content

The downloadable package consists of a gzip-compressed tar archive. It contains the following files:
  1. the main program file (arraypipe.pl)
  2. an example configuration file (arraypipe.config)
  3. the C++ source code for a permutation program (permutationTest.cpp)
  4. a documentation file (README.txt)
  5. installation instructions (INSTALL.txt)
  6. a file with changes between updates (CHANGES.txt)
  7. and the copyright notice (Artistic.txt).
After the download you can unpack the package with the following command:
tar zxvf arraypipe_1.6.1.tgz

Requirements

ArrayPipe has been successfully tested on the following operating systems: Red Hat 7.3, Red Hat 9.0, Fedora Core 1, SuSE 9.0. It requires the installation of Ghostscript, which comes pre-installed with most Linux distributions, or can be downloaded from the Ghostscript home page. You also need to have the Perl GD.pm module, which can be downloaded from CPAN as well as the R statistical package (www.r-project.org) and BioConductor (www.bioconductor.org). They are all freely available. If you would like to run ArrayPipe as a web service, you need to have a web server in place (Apache 1.3.x and 2.0 both work fine).

Installation

For installation instructions, please refer to the INSTALL.txt file in the ArrayPipe package.

Documentation

Documentation can be found in the README.txt file in the ArrayPipe package. In addition to this, a user guide and a tutorial can be found online.

Reference

Please cite the following publication if you use ArrayPipe in your research:
Hokamp K, Roche FM, Acab M, Rousseau ME, Kuo B, Goode D, Aeschliman D, Bryan J, Babiuk LA, Hancock RE, Brinkman FS (2004) Nucleic Acids Research 32 (Web Server issue):W457-459 PDF, PMID: 15215429

Contact

For information, please email arraypipe-REMOVECAPSemail at sfu.ca (primary contact: Karsten Hokamp). If you are interested in being notified about changes in the status of ArrayPipe, please subscribe to the arraypipe-update mailing list by emailing maillist at sfu.ca with "subscribe arraypipe-update" in the subject or body of the message.

Disclaimer

THE ARRAYPIPE PROGRAM AND WEB SERVICE ARE PROVIDED "AS IS" AND WITHOUT ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE.

This project is supported by Genome British Columbia, Genome Prairie and Genome Canada, a not-for-profit organization which is leading Canada's national strategy on genomics with $ 600 million in funding from the federal government.


© 2006 Pathogenomics of Innate Immunity: A GenomeBC Project

Return to top